PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867245
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HB-other
Protein Properties Length: 381aa    MW: 41811.9 Da    PI: 6.6033
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867245genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-081575856
               -HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
   Homeobox  8 tkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                + ++ e+e+  ++  n+ ps++  + LA+k            ++ +qV +WFqNrR+ ++
  462867245 15 LPAEVAEMEARLQQlnNSIPSRTVLQTLADKFsasperagrvAIQPKQVWNWFQNRRYSHR 75
               5677888888888666999***************************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0037781IPR001356Homeobox domain
SuperFamilySSF466895.99E-101279IPR009057Homeodomain-like
PROSITE profilePS5007110.1061377IPR001356Homeobox domain
CDDcd000861.52E-41375No hitNo description
Gene3DG3DSA:1.10.10.609.9E-71380IPR009057Homeodomain-like
PfamPF000466.8E-61475IPR001356Homeobox domain
PfamPF167197.0E-42135262IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRPPSSGAP AFRFLPAEVA EMEARLQQLN NSIPSRTVLQ TLADKFSASP ERAGRVAIQP  60
KQVWNWFQNR RYSHRAKNVR TAPPPATKMT PSGADHLQHA TASSAFRAAQ TPAAAAGAHP  120
GSSPVAVKGA VEGVQVEFEA KSARDGAWYD VAAFLSHRMF ESGDPEVRVR FSGFGAEEDE  180
WINVRKCVRQ RSLPCEATEC VAVLPGDLIL CFQEGKEQAL YFDAVVLDAQ RRRHDVRGCR  240
CRFLVRYTHD DSEEIVPLRK VCRRPETDYR LQILHAARAA AASADVRTPT KEVKVESASN  300
ENSPAEKKTA KQHKMMDVNT DEVSMVSEQE AASKTTGPAP SAPSETCNDS SSEVVMKDAE  360
PAQVIEVDDE VQVVDKVKEG E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461382666134SHH1 SAWADEE
4iur_B2e-461382666134SHH1 SAWADEE
4iut_A2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461382666134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-127SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLK3ZU860.0K3ZU86_SETIT; Uncharacterized protein
STRINGSi030167m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-109sequence-specific DNA binding transcription factors;sequence-specific DNA binding